morphology-inventory-prototype

BICCN Morphology Inventory Prototype

Goal: To create a community resource as an integral part of the BICCN Morphology Working group joint analysis effort containing CCF-mapped morphologies with annotation of cell body locations and projection targets. The inventory integrates imaging, reconstruction and registration data from multiple teams in a standardized format and organization along with essential metadata and provenance.

The inventory will include

• Organism/brain essential metadata
• Link to primary image data
• Downsampled version of primary image data in a standardized 3D image data format
• Link to imaging protocol and methods
• Cell reconstruction in primary data coordinates in a standardized SWC format
• Link to reconstruction protocol and methods
• Resampled primary image data mapped to the CCF at 10 micron resolution in a standardized 3D image data format
• Link to CCF registration protocol and methods
• Resampled cell reconstruction in CCF coordinates in a standardized SWC format
• CCF based computed and visualization
  • Computed after submission and based on specific version of CCF atlas annotation
  • See prototype thumbnails for the U19Zeng project
  • See prototype thumbnails for MouseLight neurons

## References

• BICCN data standards - Morphology data presentation (8/4/2021, Lydia Ng)